The story follows Motoko Kusanagi, a highly skilled member of the military, whom upon meeting Daisuke Aramaki, a current chief of the Public Security Section 9, in less than desirable conditions struggles to clear her name whilst forming her own independent team with the highest priority under the sponsorship and guidance of the chief Aramaki himself.

Kara and her ragtag Jedi crew seek out to find worthy Jedi to fight against an increasingly powerful warlord.

A highly experimental film presenting a story out of chronological order taking place 15 years after a near-apocalyptic catastrophe, about four traumatized 14 year olds who are tasked with piloting massive humanoid decisive weapons called Evangelion, the psychologically maladjusted adults who handle and command them, and the events and forces that affect them or which they take part in as they engage massive hostile invaders known as "Angels."

In a world where clone soldiers from three military tribes are locked in a perpetual battle of air, land and technology, one clone is separated from the battle and finds herself on the run with a group of unlikely companions.