As the young girls have discovered the truth about the cruel fate of a magical girl, one magical girl after another is destroyed. Throughout it all, there is one magical girl who continues to fight alone - Homura Akemi. Puella Magi Madoka Magica the Movie Part II: Eternal is a retelling of the second half of the TV anime series.

Madoka Kaname, an ordinary middle-schooler, along with her best friend Sayaka Miki, are offered the chance to have any wish they want granted by the mysterious Kyubey, and become magical girls and fight witches. However, fellow magical girl Homura Akemi seems intent on stopping Madoka from becoming a magical girl at any cost. Puella Magi Madoka Magica the Movie Part I: Beginnings is a retelling of the first half of the TV anime series.

Seven chosen mages and their summoned heroic spirits fight against each other to try and win the Holy Grail: a magical device that can grant any wish.

The series takes place in the near future, when it is possible to instantaneously measure and quantify a person's state of mind and personality. This information is recorded and processed, and the term "Psycho-Pass" refers to a standard used to measure an individual's being. The story centers around the "enforcement officer" Shinya Kougami, who is tasked with managing crime in such a world.

平凡的中学生鹿目圆（悠木碧 配音）有一个美满的家庭，在生活中她是个性格温顺又有爱心的好孩子。转学生晓美焰（斋藤千和 配音）的出现打破了小圆平静的生活，这个性格酷酷又体弱多病的黑长直少女似乎对小圆有着什么难言之隐。命运中的相遇出现了，小圆在路边救下了一只浑身是伤的奇怪动物 ，没想到这只动物居然会说人类的语言。它告诉小圆它的名字叫丘比（加藤英美里 配音），并且提出了一个特殊的要求，它希望小圆能够和它签订契约成为魔法少女。
魔法少女是这个世界中一种特殊的存在，她们肩负着和魔女战斗的使命，作为报酬，丘比可以实现她们任意的一个愿望。在战斗的过程中，小圆发现魔法少女这个职业并非故事里所描绘的那么美好，随时有着牺牲的可能。并且，随着战斗的升级，一个关乎于她自己的残酷真相正在逐步的浮出水面。

为了得到“圣杯”能实现一切愿望的奇迹之术，七名魔术师召唤七名英灵发起一场圣战。他们必须奋战到底，因为最终只有一人可以获得“圣杯”的力量－－“圣杯战争”就此展开。这场圣战并没有因为过去的三次战役而平息；如今，第四次战役即将开火。魔术师们带着必胜的决心，聚集到被称为“冬木”的战场迎接这神圣的战役。然而，他们之中却有一人不明白自己到底为何而战。他就是──言峰绮礼。言峰绮礼不能理解自己为什么被选中，并被赋予令咒。不过，命运将牵引他遇见另一位参战者，那就是──卫宫切嗣。卫宫切嗣比任何人都渴望得到“圣杯”。他为了达成目标，用尽所有残酷的手段。在超人气游戏“命运停驻之夜”中，对于10年前的第四次战役只概略提及。关于士郎的养父、凛的父亲，以及年轻气盛的言峰绮礼赴战的真相，如今将一一揭幕......