Immediately after winning the National Championships, Tyson is challenged by a mysterious boy named Daichi, who is determined to become the next Beyblading champion. But when they battle, their Beyblades awaken ancient dark forces that take human form and become the evil Shadow-Bladers who vow to destroy mankind! Now it's up to Tyson and the Bladebreakers to defeat the Shadow-Bladers before they carry out their destructive plan. Will they succeed... or is this the end of the Bladebreakers?

1910年代，由大日本帝国陆军设立的学校——陆军栖凤中学。这是一个为获取可用于军事的超常力量而收集、研究超自然现象的特殊机构。栖凤中学三年级学生岩元胡堂奉军部指令，奔赴全国各地进行调查。然而他所到之处，总会出现拥有特殊能力的“能力者”……！等待着岩元的各种怪奇事件与“能力者”们。向这些“能力者”递出前往学园的“推荐信”的岩元，其真正的意图究竟是……？怪奇与超自然现象，以及“能力者”的存在——揭开他们时代帷幕的浪漫奇谭，就此开幕！